diff --git a/Modules/Platform/Android-Common.cmake b/Modules/Platform/Android-Common.cmake
index 6360376a5b..5faada3b07 100644
--- a/Modules/Platform/Android-Common.cmake
+++ b/Modules/Platform/Android-Common.cmake
@@ -168,6 +168,5 @@ macro(__android_compiler_common lang)
     else()
       list(APPEND CMAKE_${lang}_STANDARD_INCLUDE_DIRECTORIES "${CMAKE_SYSROOT}/usr/include")
     endif()
-    list(REMOVE_ITEM CMAKE_${lang}_IMPLICIT_INCLUDE_DIRECTORIES "/usr/include")
   endif()
 endmacro()
diff --git a/Source/cmGeneratorTarget.cxx b/Source/cmGeneratorTarget.cxx
index b93442dc05..1802da426a 100644
--- a/Source/cmGeneratorTarget.cxx
+++ b/Source/cmGeneratorTarget.cxx
@@ -2633,18 +2633,6 @@ std::vector<std::string> cmGeneratorTarget::GetIncludeDirectories(
 
   cmDeleteAll(linkInterfaceIncludeDirectoriesEntries);
 
-  // Add standard include directories for this language.
-  std::string const standardIncludesVar =
-    "CMAKE_" + lang + "_STANDARD_INCLUDE_DIRECTORIES";
-  std::string const standardIncludes =
-    this->Makefile->GetSafeDefinition(standardIncludesVar);
-  std::vector<std::string>::size_type const before = includes.size();
-  cmSystemTools::ExpandListArgument(standardIncludes, includes);
-  for (std::vector<std::string>::iterator i = includes.begin() + before;
-       i != includes.end(); ++i) {
-    cmSystemTools::ConvertToUnixSlashes(*i);
-  }
-
   return includes;
 }
 
diff --git a/Source/cmLocalGenerator.cxx b/Source/cmLocalGenerator.cxx
index 8e0030379f..5a062bcc2e 100644
--- a/Source/cmLocalGenerator.cxx
+++ b/Source/cmLocalGenerator.cxx
@@ -916,6 +916,20 @@ void cmLocalGenerator::GetIncludeDirectories(std::vector<std::string>& dirs,
     }
   }
 
+  // Add standard include directories for this language.
+  // We do not filter out implicit directories here.
+  std::string const standardIncludesVar =
+    "CMAKE_" + lang + "_STANDARD_INCLUDE_DIRECTORIES";
+  std::string const standardIncludes =
+    this->Makefile->GetSafeDefinition(standardIncludesVar);
+  std::vector<std::string>::size_type const before = includes.size();
+  cmSystemTools::ExpandListArgument(standardIncludes, includes);
+  for (std::vector<std::string>::iterator i = includes.begin() + before;
+       i != includes.end(); ++i) {
+    cmSystemTools::ConvertToUnixSlashes(*i);
+    dirs.push_back(*i);
+  }
+
   for (std::vector<std::string>::const_iterator i = implicitDirs.begin();
        i != implicitDirs.end(); ++i) {
     if (std::find(includes.begin(), includes.end(), *i) != includes.end()) {
diff --git a/Tests/RunCMake/Android/android_sysinc.c b/Tests/RunCMake/Android/android_sysinc.c
new file mode 100644
index 0000000000..18d73dbc86
--- /dev/null
+++ b/Tests/RunCMake/Android/android_sysinc.c
@@ -0,0 +1,7 @@
+#include <dlfcn.h>
+
+#ifndef NOT_SYSTEM_DLFCN_HEADER
+#error "sysroot /usr/include appears too early"
+#endif
+
+#include "android.c"
diff --git a/Tests/RunCMake/Android/android_sysinc.cxx b/Tests/RunCMake/Android/android_sysinc.cxx
new file mode 100644
index 0000000000..5c5694b8d7
--- /dev/null
+++ b/Tests/RunCMake/Android/android_sysinc.cxx
@@ -0,0 +1,7 @@
+#include <dlfcn.h>
+
+#ifndef NOT_SYSTEM_DLFCN_HEADER
+#error "sysroot /usr/include appears too early"
+#endif
+
+#include "android.cxx"
diff --git a/Tests/RunCMake/Android/common.cmake b/Tests/RunCMake/Android/common.cmake
index bef2428cbd..015f2029ec 100644
--- a/Tests/RunCMake/Android/common.cmake
+++ b/Tests/RunCMake/Android/common.cmake
@@ -92,3 +92,19 @@ if(CMAKE_ANDROID_ARCH_ABI STREQUAL "armeabi-v7a")
 endif()
 add_executable(android_c android.c)
 add_executable(android_cxx android.cxx)
+
+# Test that an explicit /usr/include is ignored in favor of
+# appearing as a standard include directory at the end.
+set(sysinc_dirs)
+if(CMAKE_ANDROID_NDK)
+  if(NOT CMAKE_ANDROID_NDK_DEPRECATED_HEADERS)
+    list(APPEND sysinc_dirs ${CMAKE_SYSROOT_COMPILE}/usr/include)
+  else()
+    list(APPEND sysinc_dirs ${CMAKE_SYSROOT}/usr/include)
+  endif()
+endif()
+list(APPEND sysinc_dirs ${CMAKE_CURRENT_SOURCE_DIR}/sysinc)
+add_executable(android_sysinc_c android_sysinc.c)
+target_include_directories(android_sysinc_c SYSTEM PRIVATE ${sysinc_dirs})
+add_executable(android_sysinc_cxx android_sysinc.cxx)
+target_include_directories(android_sysinc_cxx SYSTEM PRIVATE ${sysinc_dirs})
diff --git a/Tests/RunCMake/Android/sysinc/dlfcn.h b/Tests/RunCMake/Android/sysinc/dlfcn.h
new file mode 100644
index 0000000000..273306c0f3
--- /dev/null
+++ b/Tests/RunCMake/Android/sysinc/dlfcn.h
@@ -0,0 +1 @@
+#define NOT_SYSTEM_DLFCN_HEADER