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The CopyFileIfDifferent, CopyFileAlways, CopyAFile and CopyADirectory methods should always copy permissions. The special cases in which a caller would pass copyPermissions=false should be handled at the call site. The parameter needlessly complicates the interface and semantics of these methods.
KWSys provides a platform-independent API to many common system features that are implemented differently on every platform. This library is intended to be shared among many projects, so it has a configurable namespace. Each project should configure KWSys to use a namespace unique to itself. See comments in CMakeLists.txt for details. You are probably reading this file in the source tree of a surrounding project. In that case, see "../README.kwsys" for details of using KWSys in your project.