chore(nx): restructure dependencies

apps/server/pnpm-workspace.yaml

@@ -1,3 +0,0 @@
-nodeLinker: isolated
-onlyBuiltDependencies:
-  - better-sqlite3

apps/server/webpack.config.cjs

@@ -36,7 +36,7 @@ function buildFilesToCopy() {
 
   for (const nodePath of nodePaths) {
     files.push({
-      from: join("..", "..", "node_modules", nodePath),
+      from: join("node_modules", nodePath),
       to: join(outputDir, "node_modules", nodePath)
     })
   }