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OpenSpace/modules/fieldlinessequence/util/kameleonfieldlinehelper.cpp

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/*****************************************************************************************
* *
* OpenSpace *
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* Copyright (c) 2014-2024 *
* *
* Permission is hereby granted, free of charge, to any person obtaining a copy of this *
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* The above copyright notice and this permission notice shall be included in all copies *
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* *
* THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, *
* INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A *
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****************************************************************************************/
#include <modules/fieldlinessequence/util/kameleonfieldlinehelper.h>
#include <modules/fieldlinessequence/util/commons.h>
#include <modules/fieldlinessequence/util/fieldlinesstate.h>
#include <openspace/util/spicemanager.h>
#include <ghoul/format.h>
#include <ghoul/logging/logmanager.h>
#include <memory>
#ifdef OPENSPACE_MODULE_KAMELEON_ENABLED
#ifdef _MSC_VER
#pragma warning (push)
// Boost throws #pragma warning: there is no warning number '4675'
#pragma warning (disable : 4619)
#endif // _MSC_VER
#include <ccmc/Kameleon.h>
#include <ccmc/KameleonInterpolator.h>
#include <ccmc/Tracer.h>
#include <modules/kameleon/include/kameleonhelper.h>
#ifdef _MSC_VER
#pragma warning (pop)
#endif // _MSC_VER
#endif // OPENSPACE_MODULE_KAMELEON_ENABLED
namespace {
constexpr std::string_view _loggerCat = "FieldlinesSequence[ Kameleon ]";
constexpr std::string_view TAsPOverRho = "T = p/rho";
constexpr std::string_view JParallelB = "Current: mag(J||B)";
// [nPa]/[amu/cm^3] * ToKelvin => Temperature in Kelvin
constexpr float ToKelvin = 72429735.6984f;
} // namespace
namespace openspace::fls {
// -------------------- DECLARE FUNCTIONS USED (ONLY) IN THIS FILE -------------------- //
#ifdef OPENSPACE_MODULE_KAMELEON_ENABLED
bool addLinesToState(ccmc::Kameleon* kameleon, const std::vector<glm::vec3>& seeds,
const std::string& tracingVar, FieldlinesState& state);
void addExtraQuantities(ccmc::Kameleon* kameleon,
std::vector<std::string>& extraScalarVars, std::vector<std::string>& extraMagVars,
FieldlinesState& state);
void prepareStateAndKameleonForExtras(ccmc::Kameleon* kameleon,
std::vector<std::string>& extraScalarVars, std::vector<std::string>& extraMagVars,
FieldlinesState& state);
#endif // OPENSPACE_MODULE_KAMELEON_ENABLED
// ------------------------------------------------------------------------------------ //
bool convertCdfToFieldlinesState(FieldlinesState& state, const std::string& cdfPath,
const std::unordered_map<std::string,
std::vector<glm::vec3>>& seedMap,
double manualTimeOffset,
const std::string& tracingVar,
std::vector<std::string>& extraVars,
std::vector<std::string>& extraMagVars)
{
#ifndef OPENSPACE_MODULE_KAMELEON_ENABLED
LERROR("CDF inputs provided but Kameleon module is deactivated");
return false;
#else // OPENSPACE_MODULE_KAMELEON_ENABLED
// Create Kameleon object and open CDF file!
std::unique_ptr<ccmc::Kameleon> kameleon = kameleonHelper::createKameleonObject(
cdfPath
);
state.setModel(fls::stringToModel(kameleon->getModelName()));
double cdfDoubleTime = kameleonHelper::getTime(kameleon.get(), manualTimeOffset);
state.setTriggerTime(cdfDoubleTime);
// get time as string.
std::string cdfStringTime = SpiceManager::ref().dateFromEphemerisTime(
cdfDoubleTime, "YYYYMMDDHRMNSC::RND"
);
// use time as string for picking seedpoints from seedm
std::vector<glm::vec3> seedPoints = seedMap.at(cdfStringTime);
bool success = addLinesToState(kameleon.get(), seedPoints, tracingVar, state);
if (success) {
// The line points are in their RAW format (unscaled & maybe spherical)
// Before we scale to meters (and maybe cartesian) we must extract
// the extraQuantites, as the iterpolator needs the unaltered positions
addExtraQuantities(kameleon.get(), extraVars, extraMagVars, state);
switch (state.model()) {
case fls::Model::Batsrus:
state.scalePositions(fls::ReToMeter);
break;
case fls::Model::Enlil:
state.convertLatLonToCartesian(fls::AuToMeter);
break;
default:
break;
}
return true;
}
return false;
#endif // OPENSPACE_MODULE_KAMELEON_ENABLED
}
#ifdef OPENSPACE_MODULE_KAMELEON_ENABLED
/**
* Traces and adds line vertices to state.
* Vertices are not scaled to meters nor converted from spherical into cartesian
* coordinates.
* Note that extraQuantities will NOT be set!
*/
bool addLinesToState(ccmc::Kameleon* kameleon, const std::vector<glm::vec3>& seedPoints,
const std::string& tracingVar, FieldlinesState& state) {
float innerBoundaryLimit;
switch (state.model()) {
case fls::Model::Batsrus:
innerBoundaryLimit = 2.5f; // TODO specify in Lua?
break;
case fls::Model::Enlil:
innerBoundaryLimit = 0.11f; // TODO specify in Lua?
break;
default:
LERROR(
"OpenSpace's fieldlines sequence currently only supports CDFs from the "
"BATSRUS and ENLIL models"
);
return false;
}
// ---------------------------- LOAD TRACING VARIABLE ---------------------------- //
if (!kameleon->loadVariable(tracingVar)) {
LERROR("Failed to load tracing variable: " + tracingVar);
return false;
}
bool success = false;
LINFO("Tracing field lines");
// LOOP THROUGH THE SEED POINTS, TRACE LINES, CONVERT POINTS TO glm::vec3 AND STORE //
for (const glm::vec3& seed : seedPoints) {
//--------------------------------------------------------------------------//
// We have to create a new tracer (or actually a new interpolator) for each //
// new line, otherwise some issues occur //
//--------------------------------------------------------------------------//
auto interpolator = std::make_unique<ccmc::KameleonInterpolator>(kameleon->model);
ccmc::Tracer tracer(kameleon, interpolator.get());
tracer.setInnerBoundary(innerBoundaryLimit); // TODO specify in Lua?
ccmc::Fieldline ccmcFieldline = tracer.bidirectionalTrace(
tracingVar,
seed.x,
seed.y,
seed.z
);
const std::vector<ccmc::Point3f>& positions = ccmcFieldline.getPositions();
const size_t nLinePoints = positions.size();
std::vector<glm::vec3> vertices;
vertices.reserve(nLinePoints);
for (const ccmc::Point3f& p : positions) {
vertices.emplace_back(p.component1, p.component2, p.component3);
}
state.addLine(vertices);
success |= (nLinePoints > 0);
}
return success;
}
#endif // OPENSPACE_MODULE_KAMELEON_ENABLED
/**
* Loops through state's _vertexPositions and extracts corresponding 'extraQuantities'
* from the kameleon object using a ccmc::interpolator.
* Note that the positions MUST be unaltered (NOT scaled NOR converted to a different
* coordinate system)!
*
* @param kameleon raw pointer to an already opened Kameleon object
* @param extraScalarVars vector of strings. Strings should be names of a scalar
* quantities to load into _extraQuantites; such as: "T" for temperature or "rho" for
* density.
* @param extraMagVars vector of strings. Size must be multiple of 3. Strings should be
* names of the components needed to calculate magnitude. E.g. {"ux", "uy", "uz"} will
* calculate: sqrt(ux*ux + uy*uy + uz*uz). Magnitude will be stored in _extraQuantities
* @param state, The FieldlinesState which the extra quantities should be added to.
*/
#ifdef OPENSPACE_MODULE_KAMELEON_ENABLED
void addExtraQuantities(ccmc::Kameleon* kameleon,
std::vector<std::string>& extraScalarVars,
std::vector<std::string>& extraMagVars,
FieldlinesState& state)
{
prepareStateAndKameleonForExtras(kameleon, extraScalarVars, extraMagVars, state);
const size_t nXtraScalars = extraScalarVars.size();
const size_t nXtraMagnitudes = extraMagVars.size() / 3;
auto interpolator = std::make_unique<ccmc::KameleonInterpolator>(kameleon->model);
// ------ Extract all the extraQuantities from kameleon and store in state! ------ //
for (const glm::vec3& p : state.vertexPositions()) {
// Load the scalars!
for (size_t i = 0; i < nXtraScalars; i++) {
float val;
if (extraScalarVars[i] == TAsPOverRho) {
val = interpolator->interpolate("p", p.x, p.y, p.z);
val *= ToKelvin;
val /= interpolator->interpolate("rho", p.x, p.y, p.z);
}
else {
val = interpolator->interpolate(extraScalarVars[i], p.x, p.y, p.z);
// When measuring density in ENLIL CCMC multiply by the radius^2
if (extraScalarVars[i] == "rho" && state.model() == fls::Model::Enlil) {
val *= std::pow(p.x * fls::AuToMeter, 2.0f);
}
}
state.appendToExtra(i, val);
}
// Calculate and store the magnitudes!
for (size_t i = 0; i < nXtraMagnitudes; i++) {
const size_t idx = i*3;
const float x = interpolator->interpolate(extraMagVars[idx] , p.x, p.y, p.z);
const float y = interpolator->interpolate(extraMagVars[idx+1], p.x, p.y, p.z);
const float z = interpolator->interpolate(extraMagVars[idx+2], p.x, p.y, p.z);
float val;
// When looking at the current's magnitude in Batsrus, CCMC staff are
// only interested in the magnitude parallel to the magnetic field
if (state.extraQuantityNames()[nXtraScalars + i] == JParallelB) {
const glm::vec3 normMagnetic = glm::normalize(glm::vec3(
interpolator->interpolate("bx", p.x, p.y, p.z),
interpolator->interpolate("by", p.x, p.y, p.z),
interpolator->interpolate("bz", p.x, p.y, p.z)));
// Magnitude of the part of the current vector that's parallel to
// the magnetic field vector!
val = glm::dot(glm::vec3(x,y,z), normMagnetic);
}
else {
val = std::sqrt(x*x + y*y + z*z);
}
state.appendToExtra(i + nXtraScalars, val);
}
}
}
#endif // OPENSPACE_MODULE_KAMELEON_ENABLED
/** Validate the provided extra quantity variables -> load the data from the validated
* quantities into the kameleon object & add the quantity names into the state's
* _extraQuantityNames vector.
*
* @param kameleon, raw pointer to an already opened kameleon object
* @param extraScalarVars, names of scalar quantities to add to state; e.g "rho" for
* density
* @param extraMagVars, names of the variables used for calculating magnitudes. Must be
* multiple of 3.
*/
#ifdef OPENSPACE_MODULE_KAMELEON_ENABLED
void prepareStateAndKameleonForExtras(ccmc::Kameleon* kameleon,
std::vector<std::string>& extraScalarVars,
std::vector<std::string>& extraMagVars,
FieldlinesState& state)
{
std::vector<std::string> extraQuantityNames;
fls::Model model = fls::stringToModel(kameleon->getModelName());
// Load the existing SCALAR variables into kameleon.
// Remove non-existing variables from vector
for (int i = 0; i < static_cast<int>(extraScalarVars.size()); i++) {
std::string& str = extraScalarVars[i];
bool success = kameleon->doesVariableExist(str) && kameleon->loadVariable(str);
if (!success &&
(model == fls::Model::Batsrus &&
(str == TAsPOverRho || str == "T" || str == "t"))
)
{
LDEBUG(
"BATSRUS doesn't contain variable T for temperature. Trying to calculate "
"it using the ideal gas law: T = pressure/density"
);
constexpr const char p[] = "p";
constexpr const char r[] = "rho";
success = kameleon->doesVariableExist(p) && kameleon->loadVariable(p) &&
kameleon->doesVariableExist(r) && kameleon->loadVariable(r);
str = TAsPOverRho;
}
if (!success) {
LWARNING(std::format("Failed to load extra variable '{}'. Ignoring", str));
extraScalarVars.erase(extraScalarVars.begin() + i);
--i;
}
else {
extraQuantityNames.push_back(str);
}
}
// Load the existing magnitude variables (should be provided in multiple of 3)
// into kameleon. Remove non-existing variables from vector
if (extraMagVars.size() % 3 == 0) {
for (size_t i = 0; i < extraMagVars.size(); i += 3) {
const std::string& s1 = extraMagVars[i];
const std::string& s2 = extraMagVars[i+1];
const std::string& s3 = extraMagVars[i+2];
bool success = kameleon->doesVariableExist(s1) &&
kameleon->doesVariableExist(s2) &&
kameleon->doesVariableExist(s3) &&
kameleon->loadVariable(s1) &&
kameleon->loadVariable(s2) &&
kameleon->loadVariable(s3);
std::string name = "Magnitude of (" + s1 + ", " + s2 + ", " + s3 + ")";
if (success && model == fls::Model::Batsrus &&
s1 == "jx" && s2 == "jy" && s3 == "jz")
{
// CCMC isn't really interested in the magnitude of current, but by the
// magnitude of the part of the current's vector that is parallel to the
// magnetic field => ensure that the magnetic variables are loaded
success = kameleon->doesVariableExist("bx") &&
kameleon->doesVariableExist("by") &&
kameleon->doesVariableExist("bz") &&
kameleon->loadVariable("bx") &&
kameleon->loadVariable("by") &&
kameleon->loadVariable("bz");
name = JParallelB;
}
if (!success) {
LWARNING(std::format(
"Failed to load at least one of the magnitude variables: '{}', '{}', "
"'{}'. Removing ability to store corresponding magnitude",
s1, s2, s3
));
extraMagVars.erase(
extraMagVars.begin() + i,
extraMagVars.begin() + i + 3
);
i -= 3;
}
else {
extraQuantityNames.push_back(std::move(name));
}
}
}
else {
// WRONG NUMBER OF MAGNITUDE VARIABLES.. REMOVE ALL!
extraMagVars.clear();
LWARNING(std::format(
"Wrong number of variables provided for storing magnitudes. Expects multiple "
"of 3 but {} are provided",
extraMagVars.size()
));
}
state.setExtraQuantityNames(std::move(extraQuantityNames));
}
#endif // OPENSPACE_MODULE_KAMELEON_ENABLED
} // namespace openspace::fls