OpenSpace/modules/kameleonvolume/tasks/kameleonvolumetorawtask.cpp

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#include <modules/kameleonvolume/tasks/kameleonvolumetorawtask.h>

#include <modules/kameleonvolume/kameleonvolumereader.h>
#include <modules/volume/rawvolumewriter.h>
#include <openspace/documentation/verifier.h>
#include <ghoul/fmt.h>
#include <ghoul/filesystem/filesystem.h>
#include <ghoul/misc/dictionaryluaformatter.h>

namespace {
    constexpr const char* KeyInput = "Input";
    constexpr const char* KeyRawVolumeOutput = "RawVolumeOutput";
    constexpr const char* KeyDictionaryOutput = "DictionaryOutput";
    constexpr const char* KeyDimensions = "Dimensions";
    constexpr const char* KeyVariable = "Variable";
    constexpr const char* KeyTime = "Time";
    constexpr const char* KeyLowerDomainBound = "LowerDomainBound";
    constexpr const char* KeyUpperDomainBound = "UpperDomainBound";

    constexpr const char* KeyMinValue = "MinValue";
    constexpr const char* KeyMaxValue = "MaxValue";

    constexpr const char* KeyVisUnit = "VisUnit";
} // namespace

namespace openspace::kameleonvolume {

documentation::Documentation KameleonVolumeToRawTask::documentation() {
    using namespace documentation;
    return {
        "KameleonVolumeToRawTask",
        "kameleon_metadata_to_json_task",
        {
            {
                "Type",
                new StringEqualVerifier("KameleonVolumeToRawTask"),
                Optional::No,
                "The type of this task",
            },
            {
                KeyInput,
                new StringAnnotationVerifier("A file path to a cdf file"),
                Optional::No,
                "The cdf file to extract data from",
            },
            {
                KeyRawVolumeOutput,
                new StringAnnotationVerifier("A valid filepath"),
                Optional::No,
                "The raw volume file to export data to",
            },
            {
                KeyDictionaryOutput,
                new StringAnnotationVerifier("A valid filepath"),
                Optional::No,
                "The lua dictionary file to export metadata to",
            },
            {
                KeyVariable,
                new StringAnnotationVerifier("A valid kameleon variable"),
                Optional::No,
                "The variable name to read from the kameleon dataset",
            },
            {
                KeyDimensions,
                new DoubleVector3Verifier,
                Optional::No,
                "A vector representing the number of cells in each dimension",
            },
            {
                KeyLowerDomainBound,
                new DoubleVector3Verifier,
                Optional::Yes,
                "A vector representing the lower bound of the domain, "
                "in the native kameleon grid units",
            },
            {
                KeyUpperDomainBound,
                new DoubleVector3Verifier,
                Optional::Yes,
                "A vector representing the lower bound of the domain, "
                "in the native kameleon grid units"
            },
            {
                KeyVisUnit,
                new StringAnnotationVerifier("A valid kameleon unit"),
                Optional::Yes,
                "The unit of the data",
            }
        }
    };
}


KameleonVolumeToRawTask::KameleonVolumeToRawTask(const ghoul::Dictionary& dictionary) {
    openspace::documentation::testSpecificationAndThrow(
        documentation(),
        dictionary,
        "KameleonVolumeToRawTask"
    );

    _inputPath = absPath(dictionary.value<std::string>(KeyInput));
    _rawVolumeOutputPath = absPath(dictionary.value<std::string>(KeyRawVolumeOutput));
    _dictionaryOutputPath = absPath(dictionary.value<std::string>(KeyDictionaryOutput));
    _variable = dictionary.value<std::string>(KeyVariable);
    _dimensions = glm::uvec3(dictionary.value<glm::vec3>(KeyDimensions));

    if (!dictionary.getValue<glm::vec3>(KeyLowerDomainBound, _lowerDomainBound)) {
        _autoDomainBounds = true;
    }
    if (!dictionary.getValue<glm::vec3>(KeyUpperDomainBound, _upperDomainBound)) {
        _autoDomainBounds = true;
    }
}

std::string KameleonVolumeToRawTask::description() {
    return fmt::format(
        "Extract volumetric data from cdf file {}. Write raw volume data into {} "
        "and dictionary with metadata to {}",
        _inputPath, _rawVolumeOutputPath, _dictionaryOutputPath
    );
}

void KameleonVolumeToRawTask::perform(const Task::ProgressCallback& progressCallback) {
    KameleonVolumeReader reader(_inputPath);

    std::array<std::string, 3> variables = reader.gridVariableNames();

    if (variables.size() == 3 && _autoDomainBounds) {
        _lowerDomainBound = glm::vec3(
            reader.minValue(variables[0]),
            reader.minValue(variables[1]),
            reader.minValue(variables[2])
        );

        _upperDomainBound = glm::vec3(
            reader.maxValue(variables[0]),
            reader.maxValue(variables[1]),
            reader.maxValue(variables[2])
        );
    }

    std::unique_ptr<volume::RawVolume<float>> rawVolume = reader.readFloatVolume(
        _dimensions,
        _variable,
        _lowerDomainBound,
        _upperDomainBound
    );

    progressCallback(0.5f);

    volume::RawVolumeWriter<float> writer(_rawVolumeOutputPath);
    writer.write(*rawVolume);

    progressCallback(0.9f);

    ghoul::Dictionary inputMetadata = reader.readMetaData();
    ghoul::Dictionary outputMetadata;

    std::string time = reader.time();

    // Do not include time offset in time string
    if (time.back() == 'Z') {
        time.pop_back();
    }

    outputMetadata.setValue(KeyTime, time);
    outputMetadata.setValue(KeyDimensions, glm::vec3(_dimensions));
    outputMetadata.setValue(KeyLowerDomainBound, _lowerDomainBound);
    outputMetadata.setValue(KeyUpperDomainBound, _upperDomainBound);

    outputMetadata.setValue(KeyMinValue, static_cast<float>(reader.minValue(_variable)));
    outputMetadata.setValue(KeyMaxValue, static_cast<float>(reader.maxValue(_variable)));
    outputMetadata.setValue<std::string>(KeyVisUnit, reader.getVisUnit(_variable));

    ghoul::DictionaryLuaFormatter formatter;
    std::string metadataString = formatter.format(outputMetadata);

    std::fstream f(_dictionaryOutputPath, std::ios::out);
    f << "return " << metadataString;
    f.close();

    progressCallback(1.0f);
}

} // namespace openspace::kameleonvolume