This makes the new typed serialization the default (the old
serialization is not used but the code has not been cleaned up yet).
Some things are no working in the new world:
Chunking - The compound list is not working correctly any more. The
Chunks method is having issues because it assumed things based on the
old implicit chunking.
Commit - uses a `Set(Commit)` which means that the parent commit is
embedded. We need to change that to be `Set(Ref(Commit))` so that the
parent commit is referenced instead.
Due to limitations in Go we cannot create a Def for a Map or Set that
has a key that is a Map, Set or a List. This is because the key if a Go
map needs to be a comparable and maps and slices are not comparable.
