Fix ordering of mixed stdout / stderr printing

pre_commit/commands/run.py

@@ -118,9 +118,7 @@ def _run_single_hook(classifier, hook, args, skips, cols):
     sys.stdout.flush()
 
     diff_before = cmd_output_b('git', 'diff', '--no-ext-diff', retcode=None)
-    retcode, stdout, stderr = hook.run(
-        tuple(filenames) if hook.pass_filenames else (),
-    )
+    retcode, out = hook.run(tuple(filenames) if hook.pass_filenames else ())
     diff_after = cmd_output_b('git', 'diff', '--no-ext-diff', retcode=None)
 
     file_modifications = diff_before != diff_after
@@ -141,7 +139,7 @@ def _run_single_hook(classifier, hook, args, skips, cols):
     output.write_line(color.format_color(pass_fail, print_color, args.color))
 
     if (
-            (stdout or stderr or file_modifications) and
+            (out or file_modifications) and
             (retcode or args.verbose or hook.verbose)
     ):
         output.write_line('hookid: {}\n'.format(hook.id))
@@ -150,15 +148,13 @@ def _run_single_hook(classifier, hook, args, skips, cols):
         if file_modifications:
             output.write('Files were modified by this hook.')
 
-            if stdout or stderr:
+            if out:
                 output.write_line(' Additional output:')
 
             output.write_line()
 
-        for out in (stdout, stderr):
-            assert type(out) is bytes, type(out)
-            if out.strip():
-                output.write_line(out.strip(), logfile_name=hook.log_file)
+        if out.strip():
+            output.write_line(out.strip(), logfile_name=hook.log_file)
         output.write_line()
 
     return retcode

pre_commit/xargs.py

@@ -6,6 +6,7 @@ import concurrent.futures
 import contextlib
 import math
 import os
+import subprocess
 import sys
 
 import six
@@ -112,23 +113,24 @@ def xargs(cmd, varargs, **kwargs):
     max_length = kwargs.pop('_max_length', _get_platform_max_length())
     retcode = 0
     stdout = b''
-    stderr = b''
 
     try:
         cmd = parse_shebang.normalize_cmd(cmd)
     except parse_shebang.ExecutableNotFoundError as e:
-        return e.to_output()
+        return e.to_output()[:2]
 
     partitions = partition(cmd, varargs, target_concurrency, max_length)
 
     def run_cmd_partition(run_cmd):
-        return cmd_output_b(*run_cmd, retcode=None, **kwargs)
+        return cmd_output_b(
+            *run_cmd, retcode=None, stderr=subprocess.STDOUT, **kwargs
+        )
 
     threads = min(len(partitions), target_concurrency)
     with _thread_mapper(threads) as thread_map:
         results = thread_map(run_cmd_partition, partitions)
 
-        for proc_retcode, proc_out, proc_err in results:
+        for proc_retcode, proc_out, _ in results:
             # This is *slightly* too clever so I'll explain it.
             # First the xor boolean table:
             #     T | F |
@@ -141,6 +143,5 @@ def xargs(cmd, varargs, **kwargs):
             # code. Otherwise, the returncode is unchanged.
             retcode |= bool(proc_retcode) ^ negate
             stdout += proc_out
-            stderr += proc_err
 
-    return retcode, stdout, stderr
+    return retcode, stdout