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unset renv project

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Lorenz Walthert
2021-12-24 14:36:43 +01:00
parent ba496b8369
commit b7331b653a
1 changed files with 6 additions and 3 deletions
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9
pre_commit/languages/r.py
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@@ -8,6 +8,7 @@ from typing import Tuple
from pre_commit.envcontext import envcontext
from pre_commit.envcontext import PatchesT
from pre_commit.envcontext import UNSET
from pre_commit.hook import Hook
from pre_commit.languages import helpers
from pre_commit.prefix import Prefix
@@ -23,6 +24,7 @@ healthy = helpers.basic_healthy
def get_env_patch(venv: str) -> PatchesT:
return (
('R_PROFILE_USER', os.path.join(venv, 'activate.R')),
('RENV_PROJECT', UNSET),
)
@@ -54,11 +56,12 @@ def _prefix_if_non_local_file_entry(
path = prefix.path(entry[1])
return (path,)
def _rscript_exec():
def _rscript_exec() -> str:
"""
When invoked in a sub-process of R, use full path
"""
return os.path.join(os.getenv('R_HOME', ""), 'Rscript')
return os.path.join(os.getenv('R_HOME', ''), 'Rscript')
def _entry_validate(entry: Sequence[str]) -> None:
@@ -101,7 +104,7 @@ def install_environment(
os.makedirs(env_dir, exist_ok=True)
shutil.copy(prefix.path('renv.lock'), env_dir)
shutil.copytree(prefix.path('renv'), os.path.join(env_dir, 'renv'))
cmd_output_b(
_rscript_exec(), '--vanilla', '-e',
f"""\